Analysis of an RNA-seq Strand-Specific Library from an East Timorese Cucumber Sample Reveals a Complete Cucurbit aphid-borne yellows virus Genome
نویسندگان
چکیده
Analysis of an RNA-seq library from cucumber leaf RNA extracted from a fast technology for analysis of nucleic acids (FTA) card revealed the first complete genome of Cucurbit aphid-borne yellows virus (CABYV) from East Timor. We compare it with 35 complete CABYV genomes from other world regions. It most resembled the genome of the South Korean isolate HD118.
منابع مشابه
First Complete Genome Sequence of Cucurbit aphid-borne yellows virus from Papua New Guinea
Analysis of an RNA-Seq library from cucumber leaf RNA revealed the first complete genome sequence of Cucurbit aphid-borne yellows virus (CABYV) from Papua New Guinea. We compared it with 36 complete CABYV genomes from other world regions. It most resembled the genome of South Korean isolate GS6.
متن کاملPresence of Recombinant Strain of Cucurbit Aphid Borne Yellows Virus in Iran
Background: Cucurbit aphid-borne yellows virus (CABYV) is among the most important yellowing viruses on cucurbits in Iran. The presence of CABYV has been previously reported from the major cucurbit growing areas in Iran, however, there are few studies concerning the detection of the diff erent strains of this virus in the grower’s fi elds, and especially, there is no report of ...
متن کاملFirst Complete Genome Sequence of Suakwa aphid-borne yellows virus from East Timor
We present here the first complete genomic RNA sequence of the polerovirus Suakwa aphid-borne yellows virus (SABYV), from East Timor. The isolate sequenced came from a virus-infected pumpkin plant. The East Timorese genome had a nucleotide identity of 86.5% with the only other SABYV genome available, which is from Taiwan.
متن کاملBiological and Molecular Characterization of a Korean Isolate of Cucurbit aphid-borne yellows virus Infecting Cucumis Species in Korea
Surveys of yellowing viruses in plastic tunnels and in open field crops of melon (Cucumis melo cultivar catalupo), oriental melon (C. melo cultivar oriental melon), and cucumber (C. sativus) were carried out in two melon-growing areas in 2014, Korea. Severe yellowing symptoms on older leaves of melon and chlorotic spots on younger leaves of melon were observed in the plastic tunnels. The sympto...
متن کاملAnalysis of an RNA-seq Strand-Specific Library Sample Reveals a Complete Genome of Hardenbergia mosaic virus from Native Wisteria, an Indigenous Virus from Southwest Australia
Analysis of an RNA-seq strand-specific library revealed a complete genome of Hardenbergia mosaic virus (HarMV) from RNA extracted from a native wisteria (Hardenbergia comptoniana) plant from southwest Australia. We compared it with eight other complete HarMV genomes. It most resembled (85.8% nucleotide identity) the genome of HarMV isolate MD4-D.
متن کامل